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ont bacterial genome sequencing  (Plasmidsaurus)

 
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    Plasmidsaurus ont bacterial genome sequencing
    Ont Bacterial Genome Sequencing, supplied by Plasmidsaurus, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/bacterial+genome+sequencing/bio_rxiv__64898__2026__03__27__714766-65-16-23?v=Plasmidsaurus
    Average 86 stars, based on 1 article reviews
    ont bacterial genome sequencing - by Bioz Stars, 2026-06
    86/100 stars

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    (A-C) Colonization data of PMSS1 and either an (A-B) isometric one-day isolate (G or I in ) or an (C) altered LPS electrophoretic mobility one-day isolate (H in ) coinfected into 10 C57BL6/N mice each for 1 week. Points represent the recovered CFU per gram of stomach tissue from each mouse and lines connect output strains from the same mice. LOD: limit of detection. (A-C) Points with the same shape indicate data from the same biological replicate. Replicates 1 (open circle) and 3 (open triangle) were performed with cassette-marked Isolates G, I, or H in female mice, while Replicate 2 (open square) was performed with cassette-marked PMSS1 in male mice. (D-E) Amplicon sequencing of futB from the stomach homogenate of representative mice from (D) PMSS1/G or I or (E) PMSS1/H coinfections displayed as the percentage of sequencing reads harboring each repeat length of the C-terminal 21-bp repeat (rpt) motif. Input and expected outputs are based on WGS and CFU data.

    Journal: bioRxiv

    Article Title: Helicobacter pylori allelic variation in cell surface genes influences human exoproteome binding and stomach tissue adherence

    doi: 10.64898/2026.03.06.710112

    Figure Lengend Snippet: (A-C) Colonization data of PMSS1 and either an (A-B) isometric one-day isolate (G or I in ) or an (C) altered LPS electrophoretic mobility one-day isolate (H in ) coinfected into 10 C57BL6/N mice each for 1 week. Points represent the recovered CFU per gram of stomach tissue from each mouse and lines connect output strains from the same mice. LOD: limit of detection. (A-C) Points with the same shape indicate data from the same biological replicate. Replicates 1 (open circle) and 3 (open triangle) were performed with cassette-marked Isolates G, I, or H in female mice, while Replicate 2 (open square) was performed with cassette-marked PMSS1 in male mice. (D-E) Amplicon sequencing of futB from the stomach homogenate of representative mice from (D) PMSS1/G or I or (E) PMSS1/H coinfections displayed as the percentage of sequencing reads harboring each repeat length of the C-terminal 21-bp repeat (rpt) motif. Input and expected outputs are based on WGS and CFU data.

    Article Snippet: Samples were quantified and quality checked by Tapestation (Agilent 4200), then submitted for standard bacterial genome sequencing through Plasmidsaurus.

    Techniques: Amplification, Sequencing

    Maximum likelihood tree of Yersinia based on an alignment of concatenated allele sequences from 500 core genes. Bootstrap values for species-level clades are shown. The scale bar shows nucleotide substitutions per site.

    Journal: International Journal of Systematic and Evolutionary Microbiology

    Article Title: Yersinia fenwicki sp. nov., isolated from human clinical cases in Aotearoa | New Zealand and Australia

    doi: 10.1099/ijsem.0.007034

    Figure Lengend Snippet: Maximum likelihood tree of Yersinia based on an alignment of concatenated allele sequences from 500 core genes. Bootstrap values for species-level clades are shown. The scale bar shows nucleotide substitutions per site.

    Article Snippet: Assemblies for the published isolates were downloaded from either the Bacterial Isolate Genome Sequence Database (BIGSdb) Yersinia database hosted by the Pasteur Institute [ ] or EnteroBase [ ].

    Techniques: